Research Article Volume 21 Issue 5 - 2025

Integration of Paenibacillus polymyxa and Rhizophagus intraradices for Controlling Root Rot Disease of Chickpea

Marwa AM Atwa1*, Shereen EM El-Nahas2 and Ehab AD Sarhan1

1Legume and Forage Diseases Research Department, Plant Pathology Research Institute, Agricultural Research Center, Giza, Egypt

2Integrated Control Research Department, Plant Pathology Research Institute, Agricultural Research Center, Giza, Egypt

*Corresponding Author: Marwa AM Atwa, Legume and Forage Diseases Research Department, Plant Pathology Research Institute, Agricultural Research Center, Giza, Egypt.
Received: April 02, 2025; Published: May 05, 2025



The recent study investigates the biocontrol potential of Paenibacillus polymyxa and Rhizophagus intraradices (formerly Glomus intraradices), both individually and in combination, for controlling root rot and damping off diseases caused by Rhizoctonia solani of two cultivars of chickpea (Giza 3 and Giza 195) under greenhouse and field conditions at two locations, i.e., Giza and Etai El-Baroud. Preliminary results indicate that both P. polymyxa and R. intraradices significantly enhanced the proportion of surviving plants and lowered the incidence of damping off before and after emergence. The combined treatment exhibited the highest efficacy, suggesting synergistic effects that enhance plant defense mechanisms. There was an increase in the activity of peroxidase, polyphenol oxidase, and β-1,3 glucanase enzymes, correlating with elevated phenolic compound contents. On the other hand, there is an increase in the contents of micro and macro elements, total flavonoids, and proline. Moreover, there was a stimulatory effect on crop parameters and seed yield (kg/feddan) for the two cultivars in both locations.

 Keywords: Chickpea; Rhizoctonia solani; Paenibacillus polymyxa; Rhizophagus intraradices; Biological Control

  1. Namvar A., et al. “Study on the effects of organic and inorganic nitrogen fertilizer on yield, yield components, and nodulation state of chickpea (Cicer arietinum)”. Communications in Soil Science and Plant Analysis42.9 (2011): 1097-1109.
  2. Merga B and Haji J. “Economic importance of chickpea: Production, value, and world trade”. Cogent Food and Agriculture1 (2019): 1615718.
  3. “Food and Agricultural Organization (FAO) of the United Nations” (2024).
  4. Bodah E. “Root rot diseases in plants: a review of common causal agents and management strategies”. Agricultural Research and Technology: Open Access Journal3 (2017): 555661.
  5. Akber MA., et al. “Global distribution, traditional and modern detection, diagnostic, and management approaches of Rhizoctonia solani associated with legume crops”. Frontiers in Microbiology 13 (2023): 1091288.
  6. Aydin M. “Rhizoctonia solani and its biological control”. Turkish Journal of Agricultural Research 1 (2022): 118-135.
  7. Ayaz M., et al. “Bacterial and fungal biocontrol agents for plant disease protection: journey from lab to field, current status, challenges, and global perspectives”. Molecules18 (2023): 6735.
  8. de Andrade LA., et al. “Plant growth-promoting rhizobacteria for sustainable agricultural production”. Microorganisms4 (2023): 1088.
  9. Timmusk S., et al. “Paenibacillus polymyxa invades plant roots and forms biofilms”. Applied and Environmental Microbiology 11 (2005): 7292-7300.
  10. Padda KP., et al. “Paenibacillus polymyxa: a prominent biofertilizer and bio-control agent for sustainable agriculture”. In Agriculturally Important Microbes for Sustainable Agriculture, Meena, V., Mishra, P., Bisht, J., and Pattanayak, A. (eds). Singapore: Springer (2017): 165-191.
  11. Singh A., et al. “Mycorrhizal fungi as biocontrol agent for soil borne pathogens: A review”. Journal of Pharmacognosy and Phytochemistry 1S (2019): 281-284.
  12. Onyeaka H., et al. “Green microbe profile: Rhizophagus intraradices-A review of benevolent fungi promoting plant health and sustainability”. Microbiology Research2 (2024): 1028-1049.
  13. Weng W., et al. “Roles of arbuscular mycorrhizal fungi as a biocontrol agent in the control of plant diseases”. Microorganisms7 (2022): 1266.
  14. Sangwan S and Prasanna R. “Mycorrhizae helper bacteria: unlocking their potential as bioenhancers of plant-arbuscular mycorrhizal fungal associations”. Microbial Ecology 1 (2022): 1-10.
  15. Ramasamy K., et al. “Synergistic effects of arbuscular mycorrhizal fungi and plant growth promoting rhizobacteria for sustainable agricultural production”. Korean Journal of Soil Science and Fertilizer4 (2011): 637-649.
  16. Nadeem SM., et al. “The role of mycorrhizae and plant growth promoting rhizobacteria (PGPR) in improving crop productivity under stressful environments”. Biotechnology Advances2 (2014): 429-448.
  17. Atwa M. “Combination of biocontrol agents for controlling soybean damping-off caused by Rhizoctonia solani”Egyptian Journal of Phytopathology2 (2018): 15-38.
  18. Emmanuel OC and Babalola OO. “Productivity and quality of horticultural crops through co-inoculation of arbuscular mycorrhizal fungi and plant growth promoting bacteria”. Microbiological Research 239 (2020): 126569.
  19. Mawad A., et al. “Systemic resistance in chickpea (Cicer arietinum) elicited by some biotic inducers against root diseases”. Journal of Scientific Research in Science38.2 (2021): 83-115.
  20. Boeswinkel HJ. “Storage of fungal cultures in water”. Transactions of the British Mycological Society 1 (1976): 183-185.
  21. Atwa M., et al. “Induction of resistance against soybean damping-off caused by Rhizoctonia solani”. Egyptian Journal of Phytopathology 2 (2014): 137-158.
  22. Sabet KK., et al. “Differentiation between Glomus species in Egyptian soil using fatty acid methyl ester profiles”. Asian Journal of Plant Pathology 2 (2013): 60-73.
  23. Phillips JM and Hayman DS. “Improved procedures for clearing roots and staining parasitic and vesicular arbuscular mycorrhizal fungi for rapid assessment of infection”. Transactions of the British Mycological Society1 (1970): 158-161.
  24. Oliveira RS., et al. “Seed coating with arbuscular mycorrhizal fungi as an ecotechnological approach for sustainable agricultural production of common wheat (Triticum aestivum)”. Journal of Toxicology and Environmental Health, Part A 79.7 (2016): 329-337.
  25. Sene G., et al. “Seed coating with mycorrhizal fungal spores and Leifsoniabacteria: a tool for microbiological fertilization and a seed protection strategy from insect damage”. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences 91 (2021): 909-918.
  26. Koske RE and Gemma JN. “A modified procedure for staining roots to detect VA mycorrhizas”. Mycological Research 4 (1989): 486-488.
  27. Page AL., et al. “Methods of Soil Analysis”. Part 2. Chemical and microbiological properties. Agronomy monographs No. 9, 2nd edition (1982): 539-624.
  28. Cottenie A., et al. “Chemical analysis of plants and soils”. Laboratory of analytical and agrochemistry. State University, Ghent Belgium (1982): 63.
  29. Cottenie A., et al. "Fractionation and determination of trace elements in plants, soils and sediments". Pure and Applied Chemistry 1 (1980): 45-53.
  30. Ondřej M., et al. “Evaluation of virulence of Fusarium solani isolates on pea”. Plant Protection Science1 (2008): 9-18.‏
  31. Chakraborty MR and Chatterjee NC. “Interaction of Trichoderma harzianum with Fusarium solani during its pathogenesis and the associated resistance of the host”. Asian Journal of Experimental Sciences 2 (2007): 351-355.
  32. Sadasivam S and Manickam A. “Biochemical Methods”. 2nd New Age Int. Pvt. Ltd. Pub. and T.N. Agric. Univ. Coimbatore, Tamil Nadu, India (1996): 108- 110.
  33. Miller GL. “Use of dinitrosalicylic acid reagent for the determination of reducing sugar”. Analytical Chemistry3 (1959): 426-428.
  34. Sutha R., et al. “Changes in protein and amino acid composition of tomato due to a tospovirus infection”. Indian Phytopathology 51(1998): 136-139.
  35. Snell FD and Snell CT. “Calorimetric methods of analysis, including some turbidimetric and nephelometric methods”. 3rd edition, Volume III (Organic I), D. Van Nostrand CO. Inc., Princeton, NJ, USA (1953): 606.
  36. Zhishen J., et al. “The determination of flavonoid contents in mulberry and their scavenging effects on superoxide radicals”. Food Chemistry4 (1999): 555-559.
  37. Bates L., et al. “Rapid determination of free proline for water-stress studies”. Plant and Soil 39 (1973): 205-207.
  38. Silva F and Azevedo CAV. “Principal components analysis in the software Assistat-Statistical Attendance”. In: World Congress on Computers in Agriculture, 7. Orlando Proceeding, American Society of Agricultural and Biological Engineers (2009).
  39. Jukanti AK., et al. “Nutritional quality and health benefits of chickpea (Cicer arietinum): a review”. British Journal of Nutrition 108.S1 (2012): S11-S26.
  40. Hwang SF., et al. “Etiology, impact and control of rhizoctonia seedling blight and root rot of chickpea on the Canadian Prairies”. Canadian Journal of Plant Science 83 (2003): 959-967.
  41. Rani R., et al. “Role of fungicides in agriculture and their impact on environment: a review”. Plant Archives1 (2024): 1013-1023.
  42. Tariq M., et al. “Biological control: a sustainable and practical approach for plant disease management”. Acta Agriculturae Scandinavica, Section B-Soil and Plant Science6 (2020): 507-524.
  43. Nielsen P and Sørensen J. “Multi-target and medium independent fungal antagonism by hydrolytic enzymes in Paenibacillus polymyxa and Bacillus pumilus strains from barley rhizosphere”. FEMS Microbiology Ecology 3 (1997): 183-192.
  44. Chávez-Ramírez B., et al. “Inhibition of Rhizoctonia solani RhCh-14 and Pythium ultimum PyFr-14 by Paenibacillus polymyxa NMA1017 and Burkholderia cenocepacia CACua-24: a proposal for biocontrol of phytopathogenic fungi”. Microbiological Research 230 (2020): 126347.
  45. Langendries S and Goormachtig S. “Paenibacillus polymyxa, a Jack of all trades”. Environmental Microbiology 10 (2021): 5659-5669.
  46. Daud NS., et al. “Paenibacillus polymyxa bioactive compounds for agricultural and biotechnological applications”. Biocatalysis and Agricultural Biotechnology18 (2019): 101092.
  47. Du N., et al. “Isolation of a potential biocontrol agent Paenibacillus polymyxa NSY50 from vinegar waste compost and its induction of host defense responses against Fusarium wilt of cucumber”. Microbiological Research 202 (2017): 1-10.
  48. Luo Y., et al. “Complete genome sequence of industrial bio-control strain Paenibacillus polymyxa HY96-2 and further analysis of its biocontrol mechanism”. Frontiers in Microbiology 9 (2018): 1520.
  49. Yao MK., et al. “Effect of two vesicular-arbuscular mycorrhizal fungi on the growth of micro-propagated potato plantlets and on the extent of diseases caused by Rhizoctonia solani”. Mycorrhiza5 (2002): 235-242.
  50. Bagyaraj DJ. “Current status of VAM as biocontrol agents for the management of plant diseases”. In: current status of biological control of plant diseases using antagonistic organism in India. (Ramanujam, B. and Rabindra, R.J. eds.). Bangalore, India. PDBC Publications (2006): 124-134.
  51. Sampangi RK and Bagyaraj DJ. “Root Diseases and Mycorrhizae”. Journal of Phytological Research 2 (1989): 1-6.
  52. Azcón-Aguilar C and Barea JM. “Arbuscular mycorrhizas and biological control of soil-borne plant pathogens - an overview of the mechanisms involved”. Mycorrhiza 6 (1997): 457-464.
  53. Budi SW., et al. “Isolation from the Sorghum bicolor mycorrhizosphere of a bacterium compatible with arbuscular mycorrhiza development and antagonistic towards soilborne fungal pathogens”. Applied and Environmental Microbiology 11 (1999): 5148-5150.
  54. Akhtar MS and Siddiqui ZA. “Glomus intraradices, Pseudomonas alcaligenes, Bacillus pumilus as effective biocontrol agents for the root-rot disease complex of chickpea (Cicer arietinum)”. Journal of General Plant Pathology 74 (2008): 53-60.
  55. Wang F., et al. “Effect of difenoconazole on the growth and activities of disease resistance related enzymes in wheat seedlings from treated seeds”. Acta Phytopathologica Sinica 30 (2000): 213-216.
  56. Van Loon LC., et al. “Significance of inducible defence related proteins in infected plants”. Annual Review of Phytopathology 44 (2006): 135-162.
  57. Almagro L., et al. “Class III peroxidases in plant defence reactions”. Journal of Experimental Botany 2 (2009): 377-390.
  58. Mayer AM. “Polyphenol oxidases in plants and fungi: going places? A review”. Phytochemistry21 (2006): 2318-2331.
  59. Hammerschmidt R. “Phenols and plant-pathogen interactions: The saga continues”. Physiological and Molecular Plant Pathology 3 (2005): 77-78.
  60. El-Khallal SM. “Induction and modulation of resistance in tomato plants against Fusarium wilt disease by bioagent fungi (arbuscular mycorrhiza) and/or hormonal elicitors (jasmonic acid and salicylic acid): 2-changes in the antioxidant enzymes, phenolic compounds and pathogen related-proteins”. Australian Journal of Basic and Applied Sciences 4 (2007): 717-732.
  61. Wang F., et al. “Multifaceted roles of flavonoids mediating plant-microbe interactions”. Microbiome1 (2022): 233.
  62. Gifford I., et al. “Distinctive patterns of flavonoid biosynthesis in roots and nodules of Datisca glomerata and Medicago revealed by metabolomic and gene expression profiles”. Frontiers in Plant Science 9 (2018): 1463.
  63. Saleh A., et al. “Global metabolic changes induced by arbuscular mycorrhizal fungi in oregano plants grown under ambient and elevated levels of atmospheric CO2”. Plant Physiology and Biochemistry 151 (2020): 255-263.
  64. Kaur S and Suseela V. “Unraveling arbuscular mycorrhiza-induced changes in plant primary and secondary metabolome”. Metabolites8 (2020): 335.
  65. Liu X., et al. “Arbuscular mycorrhizal fungi induce flavonoid synthesis for mitigating oxidative damage of trifoliate orange under water stress”. Environmental and Experimental Botany 204 (2022): 105089.
  66. Ben Rejeb K., et al. “Proline, a multifunctional amino acid involved in plant adaptation to environmental constraints”. Biologie Aujourd'hui 4 (2012): 291-299.
  67. Liu Z. “Arbuscular mycorrhizal fungi enhanced rice proline metabolism under low temperature with nitric oxide involvement”. Frontiers in Plant Science 13 (2022): 962460.
  68. Zhou L., et al. “Pangenome analysis of Paenibacillus polymyxa strains reveals the mechanism of plant growth promotion and biocontrol”. Antonie Van Leeuwenhoek11 (2020): 1539-1558.
  69. Yu L., et al. “Cooperation between arbuscular mycorrhizal fungi and plant growth-promoting bacteria and their effects on plant growth and soil quality”. PeerJ 10 (2022): e13080.
  70. Meding SM and Zasoski RJ. “Hyphal-mediated transfer of nitrate, arsenic, cesium, rubidium, and strontium between arbuscular mycorrhizal forbs and grasses from a California oak woodland”. Soil Biology and Biochemistry 1 (2008): 126-134.
  71. Cai X., et al. “Effects and mechanisms of symbiotic microbial combination agents to control tomato Fusarium crown and root rot disease”. Frontiers in Microbiology 12 (2021): 629793.
  72. Arunachalam T., et al. “Optimizing plant growth, nutrient uptake, and yield of onion through the application of phosphorus solubilizing bacteria and endophytic fungi”. Frontiers in Microbiology 15 (2024): 1442912.
  73. Yuan MM., et al. “Fungal-bacterial cooccurrence patterns differ between arbuscular mycorrhizal fungi and nonmycorrhizal fungi across soil niches”. MBio2 (2021): e03509-20.
  74. Timmusk S., et al. “Cytokinin production by Paenibacillus polymyxa”. Soil Biology and Biochemistry 13 (1999): 1847-1852.
  75. Sun H., et al. “Identification and combinatorial engineering of indole-3-acetic acid synthetic pathways in Paenibacillus polymyxa”. Biotechnology for Biofuels and Bioproducts 1 (2022): 81.
  76. Laishram B., et al. “Plant-microbe interactions: PGPM as microbial inoculants/biofertilizers for sustaining crop productivity and soil fertility”. Current Research in Microbial Sciences 8 (2025): 100333.
  77. Toljander J., et al. “Attachment of different soil bacteria to arbuscular mycorrhizal fungal extraradical hyphae is determined by hyphal vitality and fungal species”. FEMS Microbiology Letters1 (2006): 34-40.
  78. Arthurson V., et al. “Effects on Glomus mosseae root colonization by Paenibacillus polymyxa and Paenibacillus brasilensis strains as related to soil p-availability in winter wheat”. Applied and Environmental Soil Science (2011): 298097.
  79. Hildebrandt U., et al. “The bacterium Paenibacillus validus stimulates growth of the arbuscular mycorrhizal fungus Glomus intraradices up to the formation of fertile spores”. FEMS Microbiology Letters 2 (2006): 258-267.
  80. Mansfeld-Giese K., et al. “Bacterial populations associated with mycelium of the arbuscular mycorrhizal fungus Glomus intraradices”. FEMS Microbiology Ecology 2 (2002): 133-140.
  81. Fernández B., et al. “Pre-symbiotic and symbiotic interactions between Glomus intraradices and two Paenibacillus species isolated from AM propagules. In vitro and in vivo assays with soybean (AG043RG) as plant host”. Soil Biology and Biochemistry9 (2011): 1866-1872.

Marwa AM Atwa., et al. “Integration of Paenibacillus polymyxa and Rhizophagus intraradices for Controlling Root Rot Disease of Chickpea”. EC Microbiology  21.5 (2025): 01-18.