Research Article Volume 21 Issue 10 - 2025

Cyperus esculentus Inhibits DNA Gyrase-B and PBP2a in Multidrug-Resistant Escherichia coli and Staphylococcus aureus

Olumide Oluyele*

Department of Microbiology, Adekunle Ajasin University Akungba-Akoko, Nigeria

*Corresponding Author: Olumide Oluyele, Department of Microbiology, Adekunle Ajasin University Akungba-Akoko, Nigeria.
Received: June 13, 2025; Published: October 01, 2025



The global rise of antimicrobial resistance (AMR) poses a critical threat to public health, necessitating the exploration of novel therapeutic strategies against multidrug-resistant (MDR) bacterial infections. This study investigated the inhibitory potential of Cyperus esculentus (tiger nut) extracts against selected MDR pathogens. Phytochemicals were extracted using the maceration method, and antibacterial activity was assessed via the agar well diffusion technique. Gas Chromatography-Mass Spectrometry (GC-MS) was employed for phytochemical profiling. Identified bioactive compounds were subjected to virtual screening against key bacterial target proteins-DNA gyrase B and penicillin-binding protein 2a-using the Maestro Schrödinger Suite (2021-2). In vitro results revealed that the ethanolic extract exhibited notable inhibitory effects, producing zones of inhibition measuring 18 mm and 17 mm against Escherichia coli and Staphylococcus aureus, respectively. GC-MS analysis identified several active compounds, including D,L-xylitol,1-O-dodecanoyl, L-lactic acid, β-monolaurin, and dodecanoic acid pentafluorophenyl ester. Among these, D,L-xylitol,1-O-dodecanoyl demonstrated superior docking scores (-8.17 kcal/mol) compared to Levofloxacin, while dodecanoic acid pentafluorophenyl ester exhibited a more favorable binding energy (-40.32 kcal/mol) than Ceftobiprole. ADMET profiling indicated good oral bioavailability, high gastrointestinal absorption, and minimal inhibition of major CYP450 isoenzymes for most compounds. These findings suggest that C. esculentus phytochemicals exhibit notable antibacterial activity and favorable pharmacokinetic properties, highlighting their potential as candidates for novel therapeutics against MDR pathogens. Further investigation, including compound isolation and in vivo studies, is warranted to advance their development.

 Keywords: Cyperus esculentus; Multi-Drug Resistance; Escherichia coli; Staphylococcus aureus Bacteria; Phytochemicals; GC-MS Analysis; Molecular Docking; DNA Gyrase B; Penicillin-Binding Protein 2a

  1. Oluyele O., et al. “Toxicity studies on essential oil from Phoenix dactylifera (L.) seed in Wistar rats”. Biologics1 (2022): 69-80.
  2. Olotu EJ., et al. “Antimicrobial activity of honey against bacterial isolates associated with wound infections”. EC Microbiology5 (2020): 33-52.
  3. Balkrishna A., et al. “Exploring the safety, efficacy, and bioactivity of herbal medicines: Bridging traditional wisdom and modern science in healthcare”. Future Integrative Medicine1 (2024): 35-49.
  4. Oluyele O and Oladunmoye MK. “Susceptibility patterns of Staphylococcus aureus isolated from wound swabs to extracts of Vernonia amygdalina”. Journal of Advances in Medical and Pharmaceutical Sciences4 (2017): 1-11.
  5. Khan MSA and Ahmad I. “Chapter 1 - Herbal Medicine: Current Trends and Future Prospects”. Editor(s): Mohd Sajjad Ahmad Khan, Iqbal Ahmad, Debprasad Chattopadhyay, New Look to Phytomedicine, Academic Press, ISBN 9780128146194 (2019): 3-13.
  6. Badejo AA., et al. “Processing effects on the antioxidant activities of beverage blends developed from Cyperus esculentus, Hibiscus sabdariffa, and Moringa oleifera extracts”. Preventive Nutrition and Food Science3 (2014): 227-233.
  7. Edo GI., et al. “Cyperus esculentus (tiger nut): An insight into its bioactive compounds, biological activities, nutritional and health benefits”. Food Chemistry Advances 3 (2023): 100511.
  8. Adenowo AF and Kazeem MI. “Tiger nut as a functional food, pharmacological and industrial agent: A mini review”. Annals of Science and Technology1 (2020): 31-38.
  9. Djomdi HB., et al. “Innovation in tigernut (Cyperus esculentus) milk production: In situ hydrolysis of starch”. Polymers 12.6 (2020): 1404.
  10. Metsämuuronen S and Sirén H. “Bioactive phenolic compounds, metabolism and properties: A review on valuable chemical compounds in Scots pine and Norway spruce”. Phytochemistry Reviews 3 (2019): 623-664.
  11. Ihedioha TE., et al. “Effects of methanolic tuber extract of Cyperus esculentus Linn (tiger nuts) on sub-acute liver damage in albino rats”. African Journal of Pharmacy and Pharmacology15 (2019): 236-243.
  12. Nwosu LC., et al. “The phytochemical, proximate, pharmacological, GC-MS analysis of Cyperus esculentus (tiger nut): A fully validated approach in health, food and nutrition”. Food Bioscience 46 (2022): 101551.
  13. Wagner KH., et al. “Antioxidative potential of melanoidins isolated from a roasted glucose-glycine model”. Food Chemistry 3 (2002): 375-382.
  14. Sánchez-Zapata E., et al. “Tiger nut (Cyperus esculentus) commercialization: Health aspects, composition, properties, and food applications”. Comprehensive Reviews in Food Science and Food Safety4 (2012): 366-377.
  15. Onyibe PN., et al. “Effects of Vernonia amygdalina fractionate on glutathione reductase and glutathione-S-transferase in alloxan-induced diabetic Wistar rats”. Biocatalysis and Agricultural Biotechnology 36 (2021): 102118.
  16. Dash B., et al. “Search for antisickling agents from plants”. Pharmacognosy Reviews13 (2013): 53-60.
  17. Kolawole TA., et al. “Cabbage (Brassica oleracea) mitigates lead (II) acetate-induced testicular dysfunction in Wistar rats via up-regulation of Bcl-2 protein expression, pituitary-testicular hormonal axis and down-regulation of oxido-inflammatory reactions”. Andrologia8 (2022): e14476.
  18. Oluyele O., et al. “Microbial spectrum and susceptibility profile of opportunistic pathogens isolated from cancer patients attending a tertiary healthcare centre in Akure, Nigeria”. Microbes infection and Chemotherapy 3 (2023): e1961.
  19. Falowo DE., et al. “Antibiotics susceptibility pattern and plasmid profile of Escherichia coli O157 isolated from fecal samples of apparently healthy children”. International Journal of Pathogen Research1 (2018): 1-9.
  20. Awolope BA., et al. “Occurrence of multiple antibiotics resistant Enterobacteriaceae in sewage treatment plant of Oluyoro Catholic Hospital Ibadan Oyo State”. EC Microbiology1 (2020): 01-10.
  21. Osei KA., et al. “Occurrence of antimicrobial resistant Enterobacteriaceae and fungi in effluents from selected abattoirs in Akoko Local Government, Ondo State”. Futurity Medicine4 (2024): 70-83.
  22. Oluyele O., et al. “Phoenix dactylifera seed oil enhanced cellular and humoral immune response in cyclophosphamide-immunosuppressed Wistar rats”. Prospects in Pharmaceutical Sciences 1 (2025): 60-65.
  23. Oluyele O and Akinyeke TE. “Therapeutic potentials of Persea americana Peptide: In silico and Experimental studies”. Plant Biotechnology Persa3 (2025).
  24. Teneva D., et al. “Chemical composition, antioxidant activity and antimicrobial activity of essential oil from Citrus aurantium L zest against some pathogenic microorganisms”. Zeitschrift für Naturforschung 5-6c (2019): 105-111.
  25. Oluyele O., et al. “Piper guineense (Swhan and Thon) inhibits lanosterol-14α-demethylase in multi-drug resistant non-albicans Candida Species: In vitro and in silico studies”. Advances in Medical, Pharmaceutical and Dental Research1 (2025): 10-20.
  26. Zakari AD., et al. “Antimicrobial activity of the leaf extract of Bryophyllum pinnatum on some selected organisms”. Science Focus 24 (2019): 1-6.
  27. Singh G and Katoch M. “Antimicrobial activities and mechanism of action of Cymbopogon khasianus (Munro ex Hackel) Bor essential oil”. BMC Complementary Medicine and Therapies1 (2020): 331.
  28. Zakari AD., et al. “Antimicrobial activity of Moringa oleifera seed on beta-lactam resistant bacteria”. IOSR Journal of Pharmacy 8 (2020): 14-22.
  29. Arour A., et al. “Effect of fatty acids on the permeability barrier of model and biological membranes”. Chemistry and Physics of Lipids 200 (2016): 139-146.
  30. Obukhova ES and Murzina SA. “Mechanisms of the antimicrobial action of fatty acids: A review”. Applied Biochemistry and Microbiology 60 (2024): 1035-1043.
  31. Sun L., et al. “Current advance in biological production of short-chain organic acid”. Applied Microbiology and Biotechnology 21 (2020): 9109-9124.
  32. Alawode TT., et al. “Stigmasterol and β-sitosterol: Antimicrobial compounds in the leaves of Icacina trichantha identified by GC-MS”. Beni-Suef University Journal of Basic and Applied Sciences1 (2021): 80.
  33. Sutormin DA., et al. “Diversity and functions of type II topoisomerases”. Acta Naturae1 (2021): 59-75.
  34. Bush NG., et al. “Quinolones: Mechanism, lethality and their contributions to antibiotic resistance”. Molecules23 (2020): 5662.
  35. Lade H and Kim JS. “Molecular determinants of β-lactam resistance in methicillin-resistant Staphylococcus aureus (MRSA): An updated review”. Antibiotics (Basel)9 (2023): 1362.
  36. Morosini MI., et al. “Mechanisms of action and antimicrobial activity of ceftobiprole”. Revista Española de Quimioterapia 3 (2019): 3-10.
  37. Zimmerman J., et al. “Ceftobiprole medocaril: A new fifth-generation cephalosporin”. Annals of Pharmacotherapy 7 (2025): 657-665.
  38. Oyedemi OM., et al. “Bactericidal and antibiotic-modulation activities of methanol crude extracts of Ligustrum lucidum and Lobelia inflata against MRSA phenotypes: Molecular docking studies of some isolated compounds from both plants against DNA gyrase A”. South African Journal of Botany 130 (2020): 54-63.
  39. Dabhi M., et al. “In silico analysis of bioactive phytocompounds as inhibitors of penicillin-binding protein 2a (PBP2a) and class A beta-lactamase of target microorganisms”. Advances in Bioresearch 1 (2023): 415-434.
  40. Nwokebu GC., et al. “Identification of phytochemicals with inhibitory potential against beta-lactamase enzymes via computer-aided approach”. Bioorganic Chemistry 145 (2024): 107238.

Olumide Oluyele. “Cyperus esculentus Inhibits DNA Gyrase-B and PBP2a in Multidrug-Resistant Escherichia coli and Staphylococcus aureus”. EC Microbiology  21.10 (2025): 01-12.